Bioinformatics AlgorithmsAn Active Learning Approach

Lessons in this chapter

  1. WelcomeWelcome to Bioinformatics Algorithms!Welcome: How to Read Bioinformatics Algorithms
  2. 1.1A Journey of 1000 Miles...Where Does DNA Replication Begin? The Origin of Replication
  3. 1.2Hidden Messages in the Replication OriginHidden Messages in the Replication Origin: The Frequent Words Problem
  4. 1.3Some Hidden Messages are More Surprising than OthersReverse Complements and Pattern Matching in DNA
  5. 1.4An Explosion of Hidden MessagesThe Clump Finding Problem: Hidden Messages in Multiple Genomes
  6. 1.5The Simplest Way to Replicate DNAHow DNA Replication Works: The Simplest Way to Replicate DNA
  7. 1.6Asymmetry of ReplicationLeading and Lagging Strands: The Asymmetry of DNA Replication
  8. 1.7Peculiar Statistics of the Forward and Reverse Half-StrandsGC Skew and the Skew Diagram: Finding ori with Half-Strand Statistics
  9. 1.8Some Hidden Messages are More Elusive than OthersHamming Distance and Approximate Pattern Matching
  10. 1.9A Final Attempt at Finding DnaA Boxes in E. coliFinding DnaA Boxes in E. coli: Frequent Words with Mismatches
  11. EpilogueComplications in ori PredictionsComplications in Replication Origin (ori) Predictions
Solve the code challengesEvery problem in this chapter, autograded, in the interactive text Lecture videosThe full Chapter 1 playlist

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