Bioinformatics AlgorithmsAn Active Learning Approach

Lessons in this chapter

  1. 4.1The Discovery of AntibioticsThe Discovery of Antibiotics and Non-Ribosomal Peptides
  2. 4.2How Do Bacteria Make Antibiotics?How Bacteria Make Antibiotics: Protein Translation and Peptide Encoding
  3. 4.3Dodging the Central Dogma of Molecular BiologyNon-Ribosomal Peptides: Dodging the Central Dogma
  4. 4.4Sequencing Antibiotics by Shattering Them into PiecesMass Spectrometry and the Theoretical Spectrum of a Peptide
  5. 4.5A Brute Force Algorithm for Cyclopeptide SequencingA Brute Force Algorithm for Cyclopeptide Sequencing
  6. 4.6A Branch-and-Bound Algorithm for Cyclopeptide SequencingA Branch-and-Bound Algorithm for Cyclopeptide Sequencing
  7. 4.7Mass Spectrometry Meets GolfLeaderboard Cyclopeptide Sequencing for Spectra with Errors
  8. 4.8From 20 to More than 100 Amino AcidsBeyond 20 Amino Acids: Non-Proteinogenic Amino Acids
  9. 4.9The Spectral Convolution Saves the DayThe Spectral Convolution in Peptide Sequencing
  10. EpilogueFrom Simulated to Real SpectraPeptide Sequencing from Real Mass Spectra
Solve the code challengesEvery problem in this chapter, autograded, in the interactive text Lecture videosThe full Chapter 4 playlist

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